search

mjsull / Easyfig

Development version of Easyfig
86 stars 23 forks source link

easyfig.py (command line) works for tblastx but not for blastn #53

Open eneasdecarvalho opened 2 years ago

eneasdecarvalho commented 2 years ago

Hi. I tried to use easyfig.py from the command line. It worked fine for tblastx, but it seems not to be working for blastn. Apparently, makeblastdb is not been triggered when the option is blastn. Could you please check it?

/bin/sh: 1: makeblastdb: not found makeblastdb -dbtype nucl -out temp_easyfig/tempdb -in temp_easyfig/2.easyfig.fa BLAST Database error: No alias or index file found for nucleotide database [temp_easyfig/tempdb] in search path [/home/user/EasyFig_CommandLine::] Minimum blast hit reported: 101%

Building a new DB, current time: 04/20/2022 13:02:35 New DB name: /home/user/EasyFig_CommandLine/temp_easyfig/tempdb New DB title: 2.easyfig.fa Sequence type: Nucleotide Keep MBits: T Maximum file size: 1000000000B Adding sequences from FASTA; added 1 sequences in 0.000867128 seconds. Minimum blast hit reported: 24.39%

I am using Linux, all blast suite files are in the path

Cat-Jane commented 1 year ago

I am having the same issue - has this been resolved?

Thanks!