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mjsull / Easyfig

Development version of Easyfig
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Command line with -blast_files option . Error Report. #59

Closed YantingHu closed 9 months ago

YantingHu commented 1 year ago

$ python ~/hyt/Easyfig.py -o aa.bmp Rhdel01G0032900.gb Rhdel01G0032300.gb -blast_files Rhdel01G0032900_Rhdel01G0032300.blast.out

" Tab found in genbank file, this may cause some Features to be missed, please remove tabs.Tab found in genbank file, this may cause some Features to be missed, please remove tabs.Traceback (most recent call last): File "/home/huyanting/hyt/Easyfig.py", line 11466, in blastoutline, cutlist, filter, legend, legname) File "/home/huyanting/hyt/Easyfig.py", line 6029, in draw maxcut = featlengths[i/2] IndexError: list index out of range "

However these three inputs worked well with GUI.

Needing help for examples of blast files and command line.

Thaks a lot!

mjsull commented 9 months ago

Hi, all the arguments need to come before the genbank files.

python ~/hyt/Easyfig.py -o aa.bmp -blast_files Rhdel01G0032900_Rhdel01G0032300.blast.out Rhdel01G0032900.gb Rhdel01G0032300.gb should work fine.