Closed wdecoster closed 3 years ago
Hi Wouter,
Thank you for bringing this to my attention! I have resolved this issue in the latest commit and it will be a part of the next release.
Thanks! Melanie
Hi Melanie,
Thank you! Do you intend to make this release soon, or do you recommend installing from the repo to work around this?
Cheers, Wouter
Hi Wouter,
I just made the new release, so it should be available via bioconda within the next day or so.
Best, Melanie
Hi Wouter,
I'm going to go ahead and close this issue since the updated version is now live on bioconda. Please feel free to reach out if you continue to have problems when using version 1.1.3!
Thanks, Melanie
Hi,
I reproducibly encountered corrupted VCF headers (example below) which baffled me for a while, but I think I found a clue: if the first VCF in the file_list argument has no variants (but an otherwise intact header) the merged file from jasmine ends up corrupted.
These files are from CuteSV SV calling and have been processed with iris. Files can be empty as this is just a small genomic locus I am calling in.
Cheers, Wouter