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mkirsche / Jasmine

Jasmine: SV Merging Across Samples
MIT License
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SUPP INFO tag should be Integer #33

Closed fgvieira closed 2 years ago

fgvieira commented 2 years ago

In jasmine's output VCF file, both SUPP and SUPP_EXT are set as String:

##INFO=<ID=SUPP,Number=1,Type=String,Description="Number of samples supporting the variant">
##INFO=<ID=SUPP_EXT,Number=1,Type=String,Description="Number of samples supporting the variant, potentially extended across multiple merges">

However, shouldn't they be set to Integer?

mkirsche commented 2 years ago

Thank you for pointing this out! I have updated this in the Github repo so the changes will be incorporated in the next release.

Thanks! Melanie