Dear Dr,
When I merge the 25 SV files,there is some errors about my memory?My commad line as below:
jasmine file_list=merge1.txt out_file=merge.n.vcf out_dir=./ threads=6
And the error information as show follow:
Exception in thread "Thread-6" java.lang.OutOfMemoryError: Java heap space
at java.base/java.util.Arrays.copyOf(Arrays.java:3689)
at java.base/java.util.PriorityQueue.grow(PriorityQueue.java:305)
at java.base/java.util.PriorityQueue.offer(PriorityQueue.java:344)
at java.base/java.util.PriorityQueue.add(PriorityQueue.java:326)
at KDTree.search(KDTree.java:244)
at KDTree.kNearestNeighbor(KDTree.java:197)
at VariantMerger.runMerging(VariantMerger.java:205)
at ParallelMerger$MyThread.run(ParallelMerger.java:89)
Can you give some advice to deal with this?
Thank your time!
Best wishes
Dear Dr, When I merge the 25 SV files,there is some errors about my memory?My commad line as below:
jasmine file_list=merge1.txt out_file=merge.n.vcf out_dir=./ threads=6
And the error information as show follow:Can you give some advice to deal with this? Thank your time! Best wishes
Ji gaoxiang