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mkirsche / Jasmine

Jasmine: SV Merging Across Samples
MIT License
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Possible error in handling iris temp output paths #43

Open SorenKarst opened 1 year ago

SorenKarst commented 1 year ago

jasmine v. 1.1.5 conda installation.

Iris temp files resultsstore.txt and results.tsv are output to current directory and not jasmine ... out_dir=jasmine_out ... .

Defining iris_args="out_dir=jasmine_out" moves temp files to correct directory but results in an error:

Exception in thread "main" java.io.FileNotFoundException: <absolute path>/jasmine_out/<absolute path>/jasmine_out/resultsstore.txt (No such file or directory)

Thank you for a great tool.

br Soeren