search

mkirsche / Jasmine

Jasmine: SV Merging Across Samples
MIT License
175 stars 16 forks source link

SV not merged correctly #44

Open jiadong324 opened 1 year ago

jiadong324 commented 1 year ago

Dear author,

I am trying to merge SVs detected from assemblies and reads.

Here is one call from assemblies:

image

Here is another call from reads:

image

The merge command is:

Jasmine file_list={caller_merge_file} out_file={caller_merge_vcf} max_dist=1000 --dup_to_ins genome_file={iMACREF} samtools_path={SAMTOOLS} spec_len=50 spec_reads=1

The output is:

image

I am confused why SUPP_VEC=01 for the two same SVs.

Really appreciate your help!

wjwei-handsome commented 1 year ago

I encountered the same problem

wjwei-handsome commented 1 year ago

Here are some of my experiences: https://github.com/mkirsche/Jasmine/issues/47

bioteksampath commented 10 months ago

Hi @wjwei-handsome or @jiadong324

I encountered the same problem Has anyone got any solutions, Glad if i can get solutions or suggestions. Thanks, sam