Open ASLeonard opened 1 year ago
Hi, I'm not sure what triggers this if/else condition as I've used Jasmine for many other VCFs without issue, but this line will trivally cause a crash as "SUPP" is not an integer. https://github.com/mkirsche/Jasmine/blob/12b3862345b21ae5bb659ca077cfdfb021fef3d4/src/VariantOutput.java#L407 Other lines in the file have
"SUPP"
Integer.parseInt(entry.getInfo("SUPP"));
and replacing the issue on L407 with that fixes this problem.
I'll still test this on some old datasets to make sure there are no unintended consequences, but should be harmless. Best, Alex
This would probably solve the following issue https://github.com/mkirsche/Jasmine/issues/58
Hi, I'm not sure what triggers this if/else condition as I've used Jasmine for many other VCFs without issue, but this line will trivally cause a crash as
"SUPP"
is not an integer. https://github.com/mkirsche/Jasmine/blob/12b3862345b21ae5bb659ca077cfdfb021fef3d4/src/VariantOutput.java#L407 Other lines in the file haveand replacing the issue on L407 with that fixes this problem.
I'll still test this on some old datasets to make sure there are no unintended consequences, but should be harmless. Best, Alex