Hi, thanks for this awesome tool! I'm currently busy implementing it into my pipeline but I'm running into this error using a minimal test data:
delly_PosCon3.vcf has 3 variants
manta_PosCon3.vcf has 1 variants
whamg_PosCon3.vcf has 1 variants
Number of threads: 2
Merging graph ID: null
Merging graph ID: chr14_DEL_
Exception in thread "main" java.lang.NullPointerException
at java.base/java.util.TreeMap.getEntry(TreeMap.java:345)
at java.base/java.util.TreeMap.get(TreeMap.java:277)
at ParallelMerger$MyThread.run(ParallelMerger.java:86)
at ParallelMerger.run(ParallelMerger.java:62)
at Main.runJasmine(Main.java:71)
at Main.main(Main.java:22)
Hi, thanks for this awesome tool! I'm currently busy implementing it into my pipeline but I'm running into this error using a minimal test data:
The commands I used are:
And the test data used is inside this folder (3 small VCF files): jasminesv.tar.gz
I hope you are able to recreate the error with this information.
Cheers, Nicolas