mkirsche / Jasmine

Jasmine: SV Merging Across Samples
MIT License
174 stars 16 forks source link

Did the editDistanceSimilarity miscalculate? #53

Open CAShuangchao opened 1 year ago

CAShuangchao commented 1 year ago

With Jaccard distance, a smaller stringSimilarity means that the two sequences are less similar, which is logical in passesStringSimilarity. But if use edit distance, the smaller stringSimilarity(defined in editDistanceSimilarity) means that two sequences are more similar, which is conflicts with passesStringSimilarity. Is it my misunderstanding or script bug?