search

mkirsche / Jasmine

Jasmine: SV Merging Across Samples
MIT License
175 stars 16 forks source link

allow_intrasample throws exceptions #58

Open jasonbhn opened 1 year ago

jasonbhn commented 1 year ago

hi Melanie, I'm trying to combine multiple caller's SV calls into 1 vcf, the --allow_intrasample option seems like the natural way to go. but i've been running into this exception here:

Exception in thread "main" java.lang.NumberFormatException: For input string: "SUPP"
    at java.base/java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
    at java.base/java.lang.Integer.parseInt(Integer.java:652)
    at java.base/java.lang.Integer.parseInt(Integer.java:770)
    at VariantOutput$VariantGraph.updateOutputVariant(VariantOutput.java:407)
    at VariantOutput$VariantGraph.processVariant(VariantOutput.java:645)
    at VariantOutput.writeMergedVariants(VariantOutput.java:128)
    at Main.runJasmine(Main.java:76)
    at Main.main(Main.java:22)

Any idea how I can get more detail on what's wrong?

Thanks

YannLeGuen commented 8 months ago

Same question here ..

Any clues?