hi Melanie,
I'm trying to combine multiple caller's SV calls into 1 vcf, the --allow_intrasample option seems like the natural way to go. but i've been running into this exception here:
Exception in thread "main" java.lang.NumberFormatException: For input string: "SUPP"
at java.base/java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
at java.base/java.lang.Integer.parseInt(Integer.java:652)
at java.base/java.lang.Integer.parseInt(Integer.java:770)
at VariantOutput$VariantGraph.updateOutputVariant(VariantOutput.java:407)
at VariantOutput$VariantGraph.processVariant(VariantOutput.java:645)
at VariantOutput.writeMergedVariants(VariantOutput.java:128)
at Main.runJasmine(Main.java:76)
at Main.main(Main.java:22)
Any idea how I can get more detail on what's wrong?
hi Melanie, I'm trying to combine multiple caller's SV calls into 1 vcf, the --allow_intrasample option seems like the natural way to go. but i've been running into this exception here:
Any idea how I can get more detail on what's wrong?
Thanks