I've noticed that when I'm running Jasmine with parameter: --output_genotypes I get an error as following:
Exception in thread "main" java.lang.NullPointerException
at AddGenotypes.addGenotypes(AddGenotypes.java:150)
at PipelineManager.addGenotypes(PipelineManager.java:191)
at Main.postprocess(Main.java:91)
at Main.main(Main.java:27)
And Jasmine does not finish the job, and writes just part of the calls in the output file. Without --output_genotypes Jasmine doesn't have any problems and finishes, but doesn't output genotypes in the merged output VCF file.
I only have these genotypes in my VCF files (generated by Sniffles):
Hi,
I've noticed that when I'm running Jasmine with parameter:
--output_genotypes
I get an error as following:And Jasmine does not finish the job, and writes just part of the calls in the output file. Without
--output_genotypes
Jasmine doesn't have any problems and finishes, but doesn't output genotypes in the merged output VCF file.I only have these genotypes in my VCF files (generated by Sniffles):
Any idea what can be the problem? Thanks,