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mkiyer / oncoseq

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delete certain intermediate files immediately after use #2

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago 
After filtering abundant read hits and foreign contaminant hits we should 
delete the intermediate SAM files.  These take up lots of disk space and would 
lower the overall footprint of the pipeline.

-rw-r--r-- 1 mkiyer med-mctp  29G Mar 14 02:33 abundant_hits_read1.sam
-rw-r--r-- 1 mkiyer med-mctp  29G Mar 14 02:37 abundant_hits_read2.sam

Original issue reported on code.google.com by matthew....@gmail.com on 14 Mar 2012 at 5:14

GoogleCodeExporter commented 8 years ago 
Fixed! These tmp files are now removed. The read filtering stage has been 
rewritten.

Original comment by matthew....@gmail.com on 10 Feb 2013 at 6:31