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mksamur / RTCGAToolbox

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Error loading hg19.ucsc.gene.locations data #26

Closed asmagen closed 4 years ago

asmagen commented 6 years ago

Hello,

The manual of the package mentions an object called 'hg19.ucsc.gene.locations' providing a mapping between gene symbols and chromosomes. However, the object is not loaded with the package and calling data('hg19.ucsc.gene.locations') doesn't work either:

> data('hg19.ucsc.gene.locations')
Warning message:
In data("hg19.ucsc.gene.locations") :
  data set ‘hg19.ucsc.gene.locations’ not found

How can I obtain the file?

Thanks, Assaf

LiNk-NY commented 4 years ago

Hi Assaf, @asmagen Try using BiocManager::available to look for a package that matches what you're looking for. There is also the http://bioconductor.org/packages/release/BiocViews.html#___ExperimentData page for data experiment packages. Best, Marcel