search

mksamur / RTCGAToolbox

17 stars 13 forks source link

mirSeqData #28

Closed fk506cni closed 4 years ago

fk506cni commented 6 years ago

hi

I used RTCGAToolbox and get COLREAD mirRNAseq data. I found that getData function return "Read count" data. not "reads_per_million_miRNA_mapped".

I wonder "read count" is not suitable for comparing the one gene expression level among many sample. Or, is should be annotated that value is not normalized?

thank you.

LiNk-NY commented 4 years ago

Hi unkodaisuki, @fk506cni Please ask your question on the Bioconductor support site https://support.bioconductor.org If you'd like to have getFirehoseData support an additional dataset, please follow the steps taken by Matt https://github.com/mksamur/RTCGAToolbox/issues/39 to report and create a PR for the feature. Best, Marcel