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mksamur / RTCGAToolbox

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getFirehoseData creating blank object #7

Closed LiNk-NY closed 9 years ago

LiNk-NY commented 9 years ago

Hi Mehmet, I tried to create a data set object using a2 <- getFirehoseData(dataset="BRCA", runDate="20140416",gistic2_Date="20140115", RNAseq_Gene=TRUE,Clinic=TRUE,mRNA_Array=TRUE,Mutation=TRUE) but only got a blank object in return.

Object of class "data.frame" data frame with 0 columns and 0 rows

Is something wrong with the links or the download function? I'll keep looking into it. Thanks, MR

mksamur commented 9 years ago

Seems like there is something wrong with connection!I'm gonna take a look

On Thu, Apr 9, 2015 at 11:15 PM, Marcel Ramos notifications@github.com wrote:

Hi Mehmet, I tried to create a data set object using a2 <- getFirehoseData(dataset="BRCA", runDate="20140416",gistic2_Date="20140115", RNAseq_Gene=TRUE,Clinic=TRUE,mRNA_Array=TRUE,Mutation=TRUE) but only got a blank object in return.

Object of class "data.frame" data frame with 0 columns and 0 rows

Is something wrong with the links or the download function? I'll keep looking into it. Thanks, MR

— Reply to this email directly or view it on GitHub https://github.com/mksamur/RTCGAToolbox/issues/7.

mksamur commented 9 years ago

I guess there is an update on portal and parser does not work like how it suppose to be, I will try to find a solution

On Thu, Apr 9, 2015 at 11:21 PM, Mehmet Kemal Samur < mehmetkemalsamur@gmail.com> wrote:

Seems like there is something wrong with connection!I'm gonna take a look

On Thu, Apr 9, 2015 at 11:15 PM, Marcel Ramos notifications@github.com wrote:

Hi Mehmet, I tried to create a data set object using a2 <- getFirehoseData(dataset="BRCA", runDate="20140416",gistic2_Date="20140115", RNAseq_Gene=TRUE,Clinic=TRUE,mRNA_Array=TRUE,Mutation=TRUE) but only got a blank object in return.

Object of class "data.frame" data frame with 0 columns and 0 rows

Is something wrong with the links or the download function? I'll keep looking into it. Thanks, MR

— Reply to this email directly or view it on GitHub https://github.com/mksamur/RTCGAToolbox/issues/7.

mksamur commented 9 years ago

Issue has been solved! Please use the latest version! There was an update on Firehose which effected the links!