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mksamur / RTCGAToolbox

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Read local data #8

Closed LiNk-NY closed 7 years ago

LiNk-NY commented 9 years ago

Hi Mehmet, The getFirehoseData function should read files from the local directory, perhaps that can be part of the exportFiles function?

mksamur commented 9 years ago

Hi Marcel: If you have a data on your working directory that points the same dataset and date it actually reads it from there unless you won't force to download it with "forceDownload". Is what you are asking different than this? Best, Mehmet

On Wed, Apr 15, 2015 at 12:12 PM, Marcel Ramos notifications@github.com wrote:

Hi Mehmet, The getFirehoseData function should read files from the local directory, perhaps that can be part of the exportFiles function?

— Reply to this email directly or view it on GitHub https://github.com/mksamur/RTCGAToolbox/issues/8.

LiNk-NY commented 9 years ago

Yes, I see that it is supposed to read files from your working directory although, I keep seeing the message:

gdac.broadinstitute.org_OV.Clinical_Pick_Tier1.Level_4.2014120600.0.0.tar.gz

when running: ov <- getFirehoseData("OV", runDate="20141206", Clinic = TRUE, forceDownload = FALSE, getUUIDs = FALSE)

which would mean that it is downloading the file because this message output is in the exportFiles function as "message(delFodler)"

Correct me if this is wrong.

Regards, Marcel

mksamur commented 9 years ago

Yep it still put messages on system out but it reads from directory. It seems confusing you are right. I can change the messages.

On Wed, Apr 15, 2015 at 1:27 PM, Marcel Ramos notifications@github.com wrote:

Yes, I see that it is supposed to read files from your working directory although, I keep getting seeing the message:

gdac.broadinstitute.org_OV.Clinical_Pick_Tier1.Level_4.2014120600 .0.0.tar.gz

when running: ov <- getFirehoseData("OV", runDate="20141206", Clinic = TRUE, forceDownload = FALSE, getUUIDs = FALSE)

which would mean that it is downloading the file because this message output is in the exportFiles function as "message(delFodler)"

Correct me if this is wrong.

Regards, Marcel

— Reply to this email directly or view it on GitHub https://github.com/mksamur/RTCGAToolbox/issues/8#issuecomment-93492976.

LiNk-NY commented 9 years ago

Thank you Mehmet.