Closed zhonge closed 2 weeks ago
Fixed in commit 005afc2563dcefffe17985d562f4d4fe9196129a
$ cryodrgn parse_ctf_csparc J150/P10_J150_passthrough_particles.cs -o ctf.pkl -D 128 --Apix 2.49
2021-04-18 13:38:00 1313694 particles
2021-04-18 13:38:00 Image size (pix) : 128
2021-04-18 13:38:00 A/pix : 2.49
2021-04-18 13:38:00 DefocusU (A) : 15666.3037109375
2021-04-18 13:38:00 DefocusV (A) : 15522.8173828125
2021-04-18 13:38:00 Dfang (deg) : -85.99214312216307
2021-04-18 13:38:00 voltage (kV) : 300.0
2021-04-18 13:38:00 cs (mm) : 2.700000047683716
2021-04-18 13:38:00 w : 0.10000000149011612
2021-04-18 13:38:00 Phase shift (deg) : 0.0
2021-04-18 13:38:00 Saving /nobackup/users/zhonge/sandbox/ctf.pkl
TODO: update documentation
Documentation has already been updated as necessary, see: https://ez-lab.gitbook.io/cryodrgn/cryodrgn-empiar-10076-tutorial#id-3.2-convert-ctf-parameters-to-cryodrgn-format
Sometimes the cryosparc CTF metadata file (.cs) doesn't contain the image size. Add additional arguments to
cryodrgn parse_ctf_csparc
to overwrite these fields.