Annotated CAST

[rsulli55]

Merging Annotated CAST to master. The legacy CAST -> AIR -> GrFN pipeline is not removed. We added a flag to gcc_ast_to_cast.py so that "legacy" CAST generation is possible. Legacy CAST has a simple change: the FunctionDef's name attribute is a string instead of a Name node. This legacy CAST should be used for the legacy GrFN pipeline. The AnnCAST pipeline requires FunctionDef nodes to have Name nodes for the name attribute.

[codecov[bot]]

Codecov Report

Merging #291 (e01f94b) into master (1647a8e) will decrease coverage by 1.85%. The diff coverage is 25.19%.

@@            Coverage Diff             @@
##           master     #291      +/-   ##
==========================================
- Coverage   65.01%   63.15%   -1.86%     
==========================================
  Files          95       96       +1     
  Lines       18044    18914     +870     
==========================================
+ Hits        11732    11946     +214     
- Misses       6312     6968     +656     

Impacted Files	Coverage Δ
...lysis/CAST2GrFN/visitors/cast_to_agraph_visitor.py	53.65% <14.02%> (-38.96%)	:arrow_down:
...gram_analysis/CAST2GrFN/ann_cast/annotated_cast.py	28.26% <28.26%> (ø)
automates/model_assembly/networks.py	80.48% <37.50%> (-1.21%)	:arrow_down:
automates/model_assembly/metadata.py	88.54% <40.00%> (-0.69%)	:arrow_down:
automates/model_assembly/sandbox.py	51.21% <50.00%> (ø)
...mates/program_analysis/GCC2GrFN/gcc_ast_to_cast.py	76.90% <100.00%> (+0.28%)	:arrow_up:
...program_analysis/GCC2GrFN/gcc_ast_to_cast_utils.py	56.98% <100.00%> (+0.46%)	:arrow_up:
automates/model_analysis/graph_manipulation.py	70.75% <0.00%> (+0.55%)	:arrow_up:

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