Claytonm/requirements

[cl4yton]

Hi @titomeister : This has been a task I have meant to get to for a long time. Dependabot has identified several of our requirements.txt module versions that are at older versions that should be increased. This PR makes the following changes to requirements.txt:

• notebook from 6.4.1 to 6.5.10
• numpy from 1.18.2 to 1.21
• nltk from 3.4.5 to 3.6.6

nltk is only used by scripts/code_summarization , which is older code created by Paul Hein. I've added to the README here that this code may need to be verified, but I'm ok bumping without testing for now.

I'm pretty sure both of the notebook and numpy changes will not cause problems, but could you please run our PA pipeline and its tests to verify?

[codecov[bot]]

Codecov Report

Merging #301 (2e153f4) into master (6fd949a) will decrease coverage by 0.00%. The diff coverage is n/a.

@@            Coverage Diff             @@
##           master     #301      +/-   ##
==========================================
- Coverage   66.90%   66.89%   -0.01%     
==========================================
  Files         106      106              
  Lines       21725    21725              
==========================================
- Hits        14536    14534       -2     
- Misses       7189     7191       +2     

Impacted Files	Coverage Δ
automates/model_analysis/graph_manipulation.py	70.19% <0.00%> (-0.56%)	:arrow_down:

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[cl4yton]

Code cov went down a minuscule amount for automates/model_analysis/graph_manipulation.py