How to visualize RNA secondary structure

ml4bio / e2efold

pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"

MIT License

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How to visualize RNA secondary structure #13

Open Zuricho opened 2 years ago

Zuricho commented 2 years ago

Hello, I didn't find the visualization code in your repo. Your paper alse didn't mention reference for visualization. Could you tell me how to plot the RNA secondary structure figures.

L0-zhang commented 2 years ago

@Zuricho Hello.I could give you a suggestion.

Turn to UFold/ufold_predict.py, who uses the tool "VARNAv3-93.jar" for visualization.

Wish it could help you.