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mlacencio / galant

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GALANT stop working after removing nodes and edges #5

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1. Open exeViacomplex.cys
2. Remove some nodes and edges
3. Run GALANT

What is the expected output? What do you see instead?
The generation of landscape; instead, I see nothing!

What version of the product are you using? On what operating system?
GALANT on Linux Ubuntu 12.04; java 1.7.0_10

Please provide any additional information below.

Original issue reported on code.google.com by mlacen...@gmail.com on 5 Apr 2013 at 3:10

GoogleCodeExporter commented 9 years ago 
The only method the Cytoscape 2.8 provides to get the nodes is 
Cytoscape.getCyNodesList(). This method get all nodes that where stored in the 
network (visible or not). <a 
ref="https://groups.google.com/forum/?fromgroups=#!topic/cytoscape-helpdesk/0zBo
WtPTgPQ"></a>. I looked for another methods, but I am stuck in the Cytoscape 
library. I would need to change the cytoscape and everytime someone wants to 
download Galant, one would need to download my version of cytoscape, what is 
impracticable. The solution for this issue for now is solving the issue number 
1, and destroy the network and, start again.

Original comment by esthercamilo@gmail.com on 5 Apr 2013 at 9:43

GoogleCodeExporter commented 9 years ago 
[deleted comment]
GoogleCodeExporter commented 9 years ago 
Now, it shows a warning that you need to load the network again after doing a 
modification!

Original comment by esthercamilo@gmail.com on 5 Apr 2013 at 10:40

GoogleCodeExporter commented 9 years ago 
solved! Waiting more tests!

Original comment by esthercamilo@gmail.com on 8 Apr 2013 at 2:32