How to run telescope on single cell dataset

mlbendall / telescope

Quantification of transposable element expression using RNA-seq

MIT License

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How to run telescope on single cell dataset #32

Closed zijzhang closed 2 years ago

zijzhang commented 2 years ago

I have one single-cell RNAseq dataset. When I run 'telescope sc assign [samfile] [gtffile]', there is an error . It seems that the sc does not work

Information: The system is Red Hat Enterprise Linux Server release 7.7(Maipo) python=3..8.1 The telescope was installed by conda install -c bioconda telescope

mlbendall commented 2 years ago

We are currently working on STELLARscope, the single-cell version of Telescope. Stay tuned!