mlcommons / GaNDLF

A generalizable application framework for segmentation, regression, and classification using PyTorch
https://gandlf.org
Apache License 2.0
150 stars 78 forks source link

Add dynunet model #873

Closed benmalef closed 1 month ago

benmalef commented 1 month ago

Brief description

This PR adds the dynunet model.

Proposed Changes

Important notes I have added a docker-compose file. It is used for development purposes. I will delete it when the task is completed.

Checklist

github-actions[bot] commented 1 month ago

MLCommons CLA bot All contributors have signed the MLCommons CLA ✍️ ✅

codecov[bot] commented 1 month ago

Codecov Report

Attention: Patch coverage is 94.59459% with 2 lines in your changes missing coverage. Please review.

Project coverage is 94.41%. Comparing base (83795aa) to head (86e4188).

:exclamation: Current head 86e4188 differs from pull request most recent head 48abb3e

Please upload reports for the commit 48abb3e to get more accurate results.

Files Patch % Lines
GANDLF/models/dynunet_wrapper.py 92.85% 2 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## new-apis_v0.1.0-dev #873 +/- ## ======================================================= - Coverage 94.41% 94.41% -0.01% ======================================================= Files 158 159 +1 Lines 9314 9349 +35 ======================================================= + Hits 8794 8827 +33 - Misses 520 522 +2 ``` | [Flag](https://app.codecov.io/gh/mlcommons/GaNDLF/pull/873/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=mlcommons) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/mlcommons/GaNDLF/pull/873/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=mlcommons) | `94.41% <94.59%> (-0.01%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=mlcommons#carryforward-flags-in-the-pull-request-comment) to find out more.

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benmalef commented 1 month ago

@sarthakpati I made the proposed changes. Thanks for the review.

benmalef commented 1 month ago

Hi @sarthakpati, I believe that it is ready for merging.