mlcommons / GaNDLF

A generalizable application framework for segmentation, regression, and classification using PyTorch
https://gandlf.org
Apache License 2.0
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[FEATURE] Extend the files supported for ingestion #930

Open sarthakpati opened 2 months ago

sarthakpati commented 2 months ago

Is your feature request related to a problem? Please describe.

The following new file types need to be supported:

  1. Radiology: 3D DICOM tomosynthesis to standards-compliant NIfTI images (as a likely extension to the GaNDLF's anonymization submodule): example images, example code (this is a private repo - request access)
  2. Histology: a. Philips isyntax: example image, example code 1, 2 b. DICOM: example image (download using this script), example code c. DSA annotations to PNG: take annotations generated using DSA along with the input WSI, and save the associated image patches and annotations; example data, example code (both need authorization)

Describe the solution you'd like

This will probably needs to be done over multiple PRs.

Describe alternatives you've considered

N.A.

Additional context

N.A.

sarthakpati commented 6 days ago

959 takes care of 2 a and b