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mleiwe / PathologyRegistrationPipeline

A Project for the Merbl lab at Cornell. The aim is to create a registration pipeline whereby large .bif files of histological sections can be put in registration with an MRI template in order to view the anatomy in high resolution.
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Familiarise myself with the files and qupath #1

Open mleiwe opened 7 months ago

mleiwe commented 7 months ago

Estimate: 2 hrs Deadline: 2024/4/5

mleiwe commented 7 months ago

The aim is to...

  1. Be able to download and play around with the histology data
  2. Begin to see what is possible with the qupath software. The aim is to make it so that others in the lab can perform the internal registration in software they are familiar with.
  3. See if I can convert it into a format that FSL will work with