mleiwe / PathologyRegistrationPipeline

A Project for the Merbl lab at Cornell. The aim is to create a registration pipeline whereby large .bif files of histological sections can be put in registration with an MRI template in order to view the anatomy in high resolution.
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Determine output visualisation #5

Open mleiwe opened 7 months ago

mleiwe commented 7 months ago

One for Yael. Describe how you want to use this atlas. e.g. Just for basic visualisation, perform quantitative 3D analyses, binarise cell positions, etc.?

This will affect the desired output quality and so could either speed up or cause us to focus more on particular aspects