[JOSS] Tutorial dependencies

[edeno]

Running through the data formatting tutorial, I needed to install imageio-ffmpeg, pytables

xref: https://github.com/openjournals/joss-reviews/issues/5394

[edeno]

I was also unable to make this plot:

sns.set_context("notebook")

fig, (ax1, ax2) = plt.subplots(1, 2, figsize=(12, 6))

deepof.visuals.plot_heatmaps(
    my_deepof_project,
    ["B_Nose"],
    center="arena",
    exp_condition="CSDS",
    condition_value="Nonstressed",
    ax=ax1,
    show=False,
    display_arena=True,
    experiment_id="average",
)

deepof.visuals.plot_heatmaps(
    my_deepof_project,
    ["B_Nose"],
    center="arena",
    exp_condition="CSDS",
    condition_value="Stressed",
    ax=ax2,
    show=False,
    display_arena=True,
    experiment_id="average",
)

plt.tight_layout()
plt.show()

Seems like it was an error from seaborn's kdeplot?

OptionError: "No such keys(s): 'mode.use_inf_as_null'"

[edeno]

I also experienced an error creating this plot:

fig = plt.figure(figsize=(14, 5)).subplot_mosaic(
    mosaic="""
           AAAAB
           AAAAB
           """,
)

deepof.visuals.plot_enrichment(
    my_deepof_project,
    supervised_annotations=supervised_annotation,
    add_stats="Mann-Whitney",
    plot_proportions=True,
    ax = fig["A"],
)

deepof.visuals.plot_enrichment(
    my_deepof_project,
    supervised_annotations=supervised_annotation,
    add_stats="Mann-Whitney",
    plot_proportions=False,
    ax = fig["B"],
)

for ax in fig:
    fig[ax].set_xticklabels(fig[ax].get_xticklabels(), rotation=45, ha='right')
    fig[ax].set_title("")
    fig[ax].set_xlabel("")

fig["A"].get_legend().remove()

plt.tight_layout()
plt.show()

Due to the following import error

ImportError: The statsmodels package is required to use one of the multiple comparisons correction methods proposed in statannotations. Please install statsmodels or pass `comparisons_correction=None`.

[lucasmiranda42]

Hmmm. I'll have a look! Which installation did you follow? My bet is that the pip requirements I created for 0.3 are missing some optional dependencies of the parent packages, which are not optional to DeepOF

[edeno]

This was the pip install.

[lucasmiranda42]

Dear @edeno,

The latest release (deepof==0.4.5) should fix these issues. The main modification is the requirements.txt file, as stated. Please reopen and let me know if you still have problems!

Best, and thank you once again, Lucas