Prebuilt docker on dockstore?

mchaisso commented 2 months ago

Hi, I'm having trouble building the docker file. Is there an npsv2 pushed to dockstore?

mlinderm commented 2 months ago

@mchaisso Are you having trouble with the separate Dockerfile for Apple silicon or the main Dockerfile. I just pushed a fix to the former (building again I ran into issues with a go-based dependency and some of the Python dependencies) and pushed images to docker hub. I am not starting in on the main Dockerfile for x86.

mchaisso commented 2 months ago

I just was able to get this to build - it was stalling for a while and I thought it was not going to terminate. I have to build locally and then push to our cluster to evaluate. If you have advice for running through singularity, that will help (I can create a different issue).

Thanks, -Mark

On Fri, Apr 26, 2024 at 12:49 PM Michael Linderman @.***> wrote:

@mchaisso https://github.com/mchaisso Are you having trouble with the separate Dockerfile https://github.com/mlinderm/npsv2/blob/main/Dockerfile.m1 for Apple silicon or the main Dockerfile. I just pushed a fix to the former (building again I ran into issues with a go-based dependency and some of the Python dependencies) and pushed images to docker hub https://hub.docker.com/r/mlinderm0/npsv2-m1. I am not starting in on the main Dockerfile for x86.

— Reply to this email directly, view it on GitHub https://github.com/mlinderm/npsv2/issues/3#issuecomment-2080029707, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAKPGPW2JOVDYREI3EDQLMTY7KVVPAVCNFSM6AAAAABG2D2AXCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDAOBQGAZDSNZQG4 . You are receiving this because you were mentioned.Message ID: @.***>

mlinderm commented 2 months ago

Unfortunately, I don't have any experience with singularity (we don't run it on our small cluster) but happy to help troubleshoot. In the meantime, I also pushed a prebuilt linux/amd64 image.

mlinderm / npsv2

Prebuilt docker on dockstore? #3