mllg batchtools issues - Githubissues

mllg / batchtools

Tools for computation on batch systems

https://mllg.github.io/batchtools/

GNU Lesser General Public License v3.0

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issues

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Old version of Slurm, "invalid job state specified: SI"

#300 jacob-long opened 5 months ago
1
Add link to DESCRIPTION

#299 olivroy opened 5 months ago
0
Creating jobs without package dependencies installed on head node

#298 lpiep opened 6 months ago
0
Slurm resource named `clusters` in docs, and `cluster` in `getClusters`

#297 jemus42 opened 8 months ago
0
submitJob - can't find qsub function

#296 MislavSag closed 8 months ago
1
calling `batchMap` + `submitJob` in a loop triggers "Registry must be empty" error

#295 MLopez-Ibanez opened 1 year ago
1
squeue cmd not found when running R targets on singularity docker image

#294 ailtonpcf opened 1 year ago
1
Prepare release

#293 mllg closed 1 year ago
0
Effectively use batchtools for Targets-based workflow in SLURM

#292 stemangiola opened 1 year ago
4
Question: How are template files interpretted?

#291 lpiep opened 1 year ago
1
Error in (function () : unused argument (x = 3)

#290 pulidofabs opened 1 year ago
3
Make 'options(error = function(e) traceback(2))` optional in testJob

#289 mb706 opened 1 year ago
0
Edit the job template without clearing the entire registry

#288 multimeric opened 1 year ago
0
Publish 0.9.16 on CRAN

#287 multimeric closed 1 year ago
3
`$conditions` blows up rds `results/*.rds` files

#286 JZL closed 1 year ago
2
Yet another `BatchtoolsExpiration: Future ('<none>') expired` error

#285 kpj opened 2 years ago
0
makeClusterFunctions store.job.collection flag documentation

#284 mb706 opened 2 years ago
0
allow LSF commands via ssh

#283 reikoch opened 2 years ago
0
All jobs expired with SGE cluster, job script permission denied

#282 ImNotaGit closed 2 years ago
2
ability to suppress warning on failure to source `source` when calling makeRegistry

#281 myoung3 opened 2 years ago
0
Job requeue on Slurm - 'no such file or directory' & workaround

#280 stuvet opened 2 years ago
1
Revert 3 sr slurm requeue patch

#279 stuvet closed 2 years ago
1
Descriptive missing job.rds file error

#278 stuvet closed 2 years ago
1
Mapped missing Slurm job state codes

#277 stuvet closed 2 years ago
1
Bugfix in waitForFile

#276 stuvet closed 2 years ago
1
scoping errors depending on objects in global environment

#275 sumny opened 3 years ago
0
Bugfix in waitForFile where fn was full file path

#274 stuvet closed 2 years ago
1
Error in readLog() on Slurm cluster

#273 stuvet opened 3 years ago
12
Execution order of jobs in the same chunk

#272 bommert opened 3 years ago
0
allow for more than one partition in SLURM

#271 aaronpeikert opened 3 years ago
0
[Question] Dynamically change number of concurrent jobs

#270 dipterix opened 3 years ago
0
Custom job submission command with TORQUE/PBS

#269 qpmnguyen opened 3 years ago
0
LSF support broken due to inappropriate shQuote

#268 DarwinAwardWinner closed 3 years ago
3
`batchMap()` requires named `more.args` arguments

#267 mtmorgan closed 3 years ago
1
segfault in batchExport

#266 rimorob opened 3 years ago
0
btlapply submitting to only a small number of nodes in Slurm

#265 yimyom opened 3 years ago
0
runOSCommand throws error with R 4.0 (missing shQuote)

#264 aschersleben opened 3 years ago
2
Error: BatchtoolsExpiration: Future ('<none>') expired and segmentation fault

#263 aruaud closed 4 years ago
2
option to overwrite registry file

#262 nick-youngblut opened 4 years ago
4
Fix job name option (-j -> -J) and add spaces for readability.

#261 izahn closed 4 years ago
2
WISH: Clarify the 'Work dir does not exist' error message

#260 HenrikBengtsson opened 4 years ago
2
system2: Cannot allocate memory

#259 nick-youngblut closed 4 years ago
1
Fix 254

#258 mllg closed 4 years ago
0
Fixing seed for jobs

#257 damirpolat opened 4 years ago
1
findConfFile missing from pkgdown reference

#256 maelle closed 4 years ago
4
grepLogs() extremely slow

#255 fweber144 closed 4 years ago
4
do not delete update files before saveRegistry() succeeded

#254 mb706 closed 4 years ago
0
WISH: Don't override R_FUTURE_CACHE_PATH if already set

#253 HenrikBengtsson closed 4 years ago
2
Slurm testing on Travis, update SLURM templates

#252 tdhock opened 4 years ago
3
submitJobs() doesn't do anything on SLURM cluster

#251 tpilz closed 4 years ago
5