Open wlandau-lilly opened 6 years ago
Looks like the system is not set up properly. Can you submit and run jobs manually?
Pretty much. For jobs that do not depend on other jobs (as opposed to drake with the future-powered parallel backend), the following test.pbs
script generates the correct output.
#PBS -N test
#PBS -l nodes=1:ppn=1
#PBS -l walltime=0:01:00
cd $PBS_O_WORKDIR
touch done.txt
echo "done"
Then the job hangs in the E
state indefinitely.
Job id Name User Time Use S Queue
------------------------- ---------------- --------------- -------- - -----
46.localhost test wlandau 00:00:00 E batch
I was just using a simple qsub test.pbs
.
So the manual job also gets stuch in the E state (E for exiting)? Then this is a configuration issue.
Seems about right, I just wish I knew what the right configuration was.
I am having trouble running
batchtools
jobs on a local installation of TORQUE on Ubuntu 16.04. I think TORQUE is working because the followingtest.pbs
produces the expected output.However, all my jobs hang in the
E
state. For example, the following R script waits indefinitely.In my case, the console message of
wait_for_jobs()
does not match
qstat
, which shows jobs hanging in theE
state.I am using the @HenrikBengtsson's torque.tmpl from future.batchtools.
Related: see my Stack Overflow post here and HenrikBengtsson/future.batchtools#12.