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mllg / batchtools

Tools for computation on batch systems
https://mllg.github.io/batchtools/
GNU Lesser General Public License v3.0
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error saving RDS and resubmit expired job got qsub error #214

Closed smilesun closed 5 years ago

smilesun commented 5 years ago

In the expired job log, it said:

9979] "### [bt]: Job terminated successfully [batchtools job.id=1750]"                                               
[9980] "Error in saveRDS(object, file = file, version = 2L) : "                                                       
[9981] "  error writing to connection"                                                                                
[9982] "Calls: <Anonymous> ... doJobCollection.JobCollection -> writeRDS -> saveRDS"                                  
[9983] "Execution halted"

I try to resubmit the jobs using submitJobs(findExpired()), I got

Submitting 59 jobs in 59 chunks using cluster functions 'TORQUE' ... Error: Fatal error occurred: 101. Command 'qsub' produced exit code 191. Output: 'qsub: No default queue specified MSG=cannot locate queue'

smilesun commented 5 years ago

it seesm that this is due to the disk is full