RepeatScout did not return any models

[emmannaemeka]

Hello

Running repeatscout and keep getting this error

RepeatModeler Round # 1

Searching for Repeats -- Sampling from the database...

• Gathering up to 40000000 bp
• Final Sample Size = 40014099 bp ( 40014099 non ambiguous )
• Num Contigs Represented = 227
• Sequence extraction : 00:00:04 (hh:mm:ss) Elapsed Time -- Running RepeatScout on the sequences...
• RepeatScout: Running build_lmer_table ( l = 14 )..
• RepeatScout: Running RepeatScout.. : 1347 raw families identified
• RepeatScout: Running filtering stage.. 0 families remaining
• RepeatScout: 00:10:18 (hh:mm:ss) Elapsed Time NOTE: RepeatScout did not return any models

What could be wrong?

[IanDMedeiros]

I am seeing the same message, "RepeatScout did not return any models," when I run RepeatScout (installed as part of RepeatModeler) on rice chromosome 12 test data. The log file doesn't provide much insight as to how I should troubleshoot this. Any suggestions?