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mmcdermott
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EventStreamGPT
Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex internal dependencies.
https://eventstreamml.readthedocs.io/en/latest/
MIT License
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Added flash attention.
#70
mmcdermott
closed
10 months ago
2
Re-organized the flat representation and sklearn code and added the capability to cache task specific flat representations.
#69
mmcdermott
closed
1 year ago
1
Some improvements to the flat representation creation process.
#68
mmcdermott
closed
1 year ago
0
Address any settings where there are no static events for #66.
#67
mmcdermott
closed
1 year ago
1
Pretrain crashes during collating static and dynamic data in pytorch_dataset
#66
juancq
closed
1 year ago
4
Adds better typing to flat representation dataframes to reduce size and address re-load errors due to type mis-matches.
#65
mmcdermott
closed
1 year ago
1
Added more end to end script-driven tests.
#64
mmcdermott
closed
1 year ago
1
Add end to end tests through the script endpoints.
#63
mmcdermott
closed
1 year ago
0
Added the ability to store and reload the best model checkpoint after early stopping, rather than the final model checkpoint.
#62
mmcdermott
closed
1 year ago
1
Modeling Configs Should be Re-arranged for Clarity, Better Defaults, and Ease-of-use
#61
mmcdermott
opened
1 year ago
0
Metrics in weights and biases should use `/` not `_` to separate name parts.
#60
mmcdermott
opened
1 year ago
0
Adds the ability to test the synthetic data tutorial notebooks to ensure there are no errors.
#59
mmcdermott
closed
1 year ago
1
Adds support for tracking additional modifier columns for measurements, which can be used in downstream pipelines like UniHPF.
#58
mmcdermott
closed
1 year ago
1
Fine tuning task baselines
#57
mmcdermott
closed
1 year ago
1
Enabling an easier install through pip / poetry, and updating some versions.
#56
mmcdermott
closed
1 year ago
0
Enables hyperparameter tuning for fine-tuning or from-scratch supervised runs
#55
mmcdermott
closed
1 year ago
0
Running out of memory during build_event_and_measurement_dfs and polars dataset
#54
juancq
closed
1 month ago
11
Support same variable name across different input sources
#53
juancq
closed
1 year ago
6
Setting train_subset_size to float generates ValidationError
#52
juancq
closed
1 year ago
1
Add flag for using pyarrow when writing parquet
#51
juancq
closed
1 year ago
0
Add flag for executing polars lazy query in streaming mode
#50
juancq
closed
1 year ago
0
Option of using pyarrow when writing parquet
#49
juancq
closed
1 year ago
0
Learnable frequency absolute temporal position embeddings and small bug fixes
#48
mmcdermott
closed
1 year ago
0
Setting maximum number of threads Polars will use
#47
juancq
closed
1 year ago
1
Add streaming flag for calls to polars collect
#46
juancq
closed
1 year ago
4
Longitudinal eval
#45
mmcdermott
closed
1 year ago
0
Vocabulary.describe doesn't appear to work if wrap_lines is True.
#44
mmcdermott
closed
1 year ago
0
Event type vocabulary should be filtered to UNKs too.
#43
mmcdermott
opened
1 year ago
0
Vocabulary serialization into configs should not include observation frequencies.
#42
mmcdermott
opened
1 year ago
0
Benchmark results over standard EHR tasks like diagnosis prediction
#41
avani17101
opened
1 year ago
3
`num_samples` is overloaded in zero shot lightning module
#40
mmcdermott
closed
1 year ago
1
Pipeline for the UNIVARIATE_REGRESSION and MULTIVARIATE_REGRESSION tasks
#39
sujeongim
closed
1 year ago
2
Fixes a few small bugs and adds a more comprehensive tutorial over local, synthetic data.
#38
mmcdermott
closed
1 year ago
0
Task dataframe will only keep one task schema row per subject.
#37
mmcdermott
closed
1 year ago
1
ESGPT Pipeline Permits Duplicate dynamic measurement rows
#36
mmcdermott
closed
1 year ago
1
Some small fixes
#35
mmcdermott
closed
1 year ago
0
self has no task_df member.
#34
mmcdermott
closed
1 year ago
1
Batch conversions
#33
mmcdermott
closed
1 year ago
0
conda environment file fails
#32
juancq
closed
6 months ago
6
Adds the ability to rename columns in static input sources.
#31
mmcdermott
closed
1 year ago
0
'ExprArrayNameSpace' object has no attribute 'eval'
#30
Guitaricet
closed
1 year ago
2
Start time bug in batch
#29
mmcdermott
closed
1 year ago
0
During zero-shot generation, inter-event times may be dropped during evaluation.
#28
mmcdermott
closed
1 year ago
0
Update README.md
#27
mmcdermott
closed
1 year ago
0
Should allow use of NLL-Beta
#26
mmcdermott
opened
1 year ago
0
Added ability to handle partially observed values for univariate and single-label classification measures.
#25
mmcdermott
closed
1 year ago
0
Possibly replace `JSONableMixin` with `OmegaConf` throughout.
#24
mmcdermott
opened
1 year ago
0
Upgrade to python 3.11 and eliminate the custom StrEnum class.
#23
mmcdermott
opened
1 year ago
0
Removed event type specificity in measurements interface, both during modeling and generation.
#22
mmcdermott
closed
1 year ago
1
Release Version 0.0.1
#21
mmcdermott
closed
1 year ago
1
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