mmcdermott / MEDS-DEV

The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health
MIT License
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Update dataset.md #31

Closed Oufattole closed 3 weeks ago

Oufattole commented 1 month ago

Thoughts on the dataset template?

We should add that the user is expected to commit in the pull request:

  1. predicates to the file datasets/${dataset_name}/predicates.yaml
  2. the filled out pull request template in the file datasets/${dataset_name}/README.md

Summary by CodeRabbit

coderabbitai[bot] commented 1 month ago

Walkthrough

The changes introduce a new markdown template for datasets within the src/MEDS_DEV/templates/dataset.md file. This template is structured to include sections for the dataset name, description, supported tasks, resources, access details, and a compliance checklist. The template aims to standardize the documentation process for datasets in the MEDS-DEV project.

Changes

File Path Change Summary
src/MEDS_DEV/templates/dataset.md Added a new markdown template for datasets, including sections for name, description, supported tasks, resources, access, and a compliance checklist.

Possibly related PRs

🐇 In the meadow, templates bloom,
For datasets, they chase away gloom.
With sections neat and checklists bright,
Documentation shines, a pure delight!
Hoppy changes, let’s all cheer,
For structured data, we hold dear! 🌼


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mmcdermott commented 1 month ago

I like this, but chat with @prockenschaub and @rvandewater -- they've added similar dataset templating information in #27, @Oufattole

rvandewater commented 4 weeks ago

@Oufattole do you prefer to take over our changes as you see fit?

kamilest commented 3 weeks ago

@prockenschaub @rvandewater I tried to merge the two versions for the dataset template (sorry this turned out to be concurrent!) and included suggestions from @Simonlee711 and coderabbit. Let me know if you have any thoughts!

@Jeanselme maybe we should also think about and request more information on any fairness-related considerations for the dataset (e.g. which groups are possible, request their definitions, etc.)

Also cc: @Oufattole @mmcdermott

rvandewater commented 3 weeks ago

Looks good @kamilest