Closed Oufattole closed 1 month ago
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The recent updates enhance the clarity, structure, and usability of the MEDS-Tab project. Key changes include improved documentation, streamlined directory management, and the renaming of specific fields for consistency. New dependencies and configuration adjustments facilitate better data handling and processing, ensuring a more efficient workflow for users. Overall, these modifications aim to simplify the user experience and enhance the functionality of the tool.
File(s) | Change Summary |
---|---|
README.md |
Updated for clarity, added compatibility info, streamlined example references, and expanded CLI script instructions. |
pyproject.toml |
Added dependencies: "meds==0.3" and "MEDS-transforms==0.0.4"; improved formatting for readability. |
src/MEDS_tabular_automl/configs/*.yaml |
Adjusted directory paths to use output_cohort_dir , enhancing organization for input/output management across all configs. |
src/MEDS_tabular_automl/describe_codes.py |
Renamed columns from 'timestamp' to 'time' and 'numerical_value' to 'numeric_value' to standardize naming conventions. |
src/MEDS_tabular_automl/generate_static_features.py |
Changed parameter name in summarize_static_measurements for consistency. |
src/MEDS_tabular_automl/generate_summarized_reps.py |
Renamed 'timestamp' to 'time' in function logic for uniformity. |
src/MEDS_tabular_automl/generate_ts_features.py |
Standardized naming by changing 'timestamp' and 'numerical_value' to 'time' and 'numeric_value'. |
src/MEDS_tabular_automl/scripts/*.py |
Enhanced data processing logic in scripts, added new functions, and streamlined configuration management. |
tests/test_integration.py |
Restructured tests for clarity, consolidated config management, and updated directory paths for output organization. |
tests/test_tabularize.py |
Improved clarity with renaming variables, updated test logic to match new directory structures, and refined assertions. |
sequenceDiagram
participant User
participant MEDS-Tab
participant DataProcessor
participant OutputManager
User->>MEDS-Tab: Request data processing
MEDS-Tab->>DataProcessor: Process data with new config
DataProcessor-->>MEDS-Tab: Return processed data
MEDS-Tab->>OutputManager: Save data to output directory
OutputManager-->>User: Provide output confirmation
🐰 "In the meadow, we hop with glee,
Changes sprouting like a blooming tree.
Paths are clearer, the code is bright,
Happy bunnies dance with delight!
With every update, our tools grow strong,
In the world of data, we all belong!" 🌼
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Summary by CodeRabbit
Documentation
New Features
Bug Fixes
Tests