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mmcdermott / MEDS_transforms

A simple set of MEDS polars-based ETL and transformation functions
MIT License
19 stars 5 forks source link

Exit metadata extraction if there is no _metadata in the event configs #154

Closed prenc closed 2 months ago

prenc commented 2 months ago

Closes #125

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Walkthrough

The recent changes enhance the extract_code_metadata.py file by adding a guard clause in the main function. This clause checks if the metadata configurations are present before proceeding with the extraction process. If no configurations are found, an informational log is generated, and the function exits early. This improvement boosts the function's robustness and efficiency by avoiding unnecessary operations when configurations are missing.

Changes

Files Change Summary
src/MEDS_transforms/extract/... Added a conditional check in the main function to log a message and exit if no metadata configs are found.

Poem

🐇 In the code where logic flows,
A check was added, now it knows!
If no configs are in sight,
It gracefully takes flight.
With logs to guide the way so clear,
Robust and swift, we hold it dear! 🌟

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codecov-commenter commented 2 months ago

:warning: Please install the 'codecov app svg image' to ensure uploads and comments are reliably processed by Codecov.

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 93.40%. Comparing base (80b31fd) to head (766f685). Report is 1 commits behind head on dev.

:white_check_mark: All tests successful. No failed tests found.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## dev #154 +/- ## ========================================== + Coverage 93.23% 93.40% +0.17% ========================================== Files 25 25 Lines 1878 1881 +3 ========================================== + Hits 1751 1757 +6 + Misses 127 124 -3 ```

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.

mmcdermott commented 2 months ago

After those two changes I'm good with this going in

mmcdermott commented 2 months ago

symlinking looks to be very viable: https://docs.python.org/3/library/pathlib.html#pathlib.Path.symlink_to

mmcdermott commented 2 months ago

I added a test so will merge this in as soon as the checks pass. Thanks again @prenc!