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mmcdermott / MEDS_transforms

A simple set of MEDS polars-based ETL and transformation functions
MIT License
15 stars 3 forks source link

Hotfix 0.0.8 #199

Closed mmcdermott closed 2 weeks ago

mmcdermott commented 2 weeks ago

Summary by CodeRabbit

coderabbitai[bot] commented 2 weeks ago

Walkthrough

The changes involve modifications to the extract_statics_and_schema function in the tokenization.py file, specifically altering the join operation to a full join and adding a coalesce=True parameter. Additionally, the test suite in test_tokenization.py has been enhanced with new data structures and expanded tests to validate the updated transformation logic.

Changes

Files Change Summary
src/MEDS_transforms/transforms/tokenization.py, tests/MEDS_Transforms/test_tokenization.py The extract_statics_and_schema function now performs a full join with a coalesce=True parameter. The test suite has been expanded with new DataFrames and dictionaries to improve validation of the tokenization process.

Sequence Diagram(s)

sequenceDiagram
    participant User
    participant TokenizationFunction
    participant DataFrames

    User->>TokenizationFunction: Call extract_statics_and_schema(df)
    TokenizationFunction->>DataFrames: Perform full join on static_by_subject and schema_by_subject
    DataFrames-->>TokenizationFunction: Return joined DataFrame
    TokenizationFunction->>User: Return processed DataFrame

Poem

🐇 In the meadow where data flows,
A full join blooms, as knowledge grows.
With coalesce, we mend the gaps,
Transforming numbers, like gentle taps.
Oh, what joy in tests we find,
Validating changes, oh so kind! 🌼

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codecov-commenter commented 2 weeks ago

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Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 94.23%. Comparing base (3519769) to head (b43abd1). Report is 1 commits behind head on main.

:white_check_mark: All tests successful. No failed tests found.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #199 +/- ## ======================================= Coverage 94.23% 94.23% ======================================= Files 27 27 Lines 2100 2100 ======================================= Hits 1979 1979 Misses 121 121 ```

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.