Attend to the new "MEDS_DEATH" code

mmcdermott / MEDS_transforms

A simple set of MEDS polars-based ETL and transformation functions

MIT License

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Attend to the new "MEDS_DEATH" code #209

Open rvandewater opened 9 hours ago

rvandewater commented 9 hours ago

@prockenschaub discovered that in the latest code extraction done by MEDS_transforms, the code for death is MEDS_DEATH (and not death). This should be changed in the event configs in order to not end up with only negative samples. E.g.,: https://github.com/Oufattole/meds-torch/blob/main/MIMICIV_TUTORIAL/configs/tasks/mortality/in_icu/first_24h.yaml. Perhaps it is possible to have some central repo for these tasks (not sure how practical though)?

justin13601 commented 9 hours ago

Perhaps it is possible to have some central repo for these tasks (not sure how practical though)?

We've started compilling a central repo for some tasks at MEDS-DEV!