Closed mmcdermott closed 1 month ago
@EthanSteinberg my plan with this is to basically make this code realize the same capabilities and conventions we have in the other ETL, as I think this base format is more naturally and easily extensible to other datasets. Basically, I've realized the structure https://github.com/Medical-Event-Data-Standard/meds_etl/blob/main/src/meds_etl/mimic/__init__.py#L63 in a config file format which I think is more portable to new datasets.
MEDS Schema: https://github.com/Medical-Event-Data-Standard/meds