ModuleNotFoundError: No module named 'streamlit.cli'

[sciguy]

Trying to run pLannotate via conda and I get the error:

ModuleNotFoundError: No module named 'streamlit.cli'

After a little digging it looks like the streamlit.cli module was moved to streamlit.web.cli in the newer versions of streamlit.

I suggest changing the import or locking the streamlit version to an earlier version.

It worked for me when I used streamlit version 1.10.0

[mmcguffi]

Sorry for the slow reply on this -- this issue has cropped up off and on again due to some issues with how Streamlit interfaces with Click. Best as I can tell Streamlit periodically fixes these compatibility issues with patches to minor releases, though it appears this continues to be an issue.

Thanks for notifying me on this. I'll take a look into your suggestions and see what makes the most sense, though perhaps removing Click from pLannotate entirely might be cleanest option.

Were you able to get it to run by manually changing the Streamlit version after a conda install of pLannotate? I just tried a fresh mamba install of pLannotate and that seems to work fine on my end.

[sciguy]

I got it to work by using a conda env file that set the version of streamlit to 1.10.0.

conda.env.yaml:

name: plannotate-env
channels:
  - conda-forge
  - bioconda
dependencies:
  - streamlit=1.10.0
  - plannotate=1.2.0

Then I used it to install pLannotate: conda env create -f conda.env.yaml

[nickcolossal]

I ended up replacing streamlit.cli with streamlit.web.cli in plannotate/pLannotate.py https://github.com/streamlit/streamlit/issues/5146#issuecomment-1223306586

[jeffreybarrick]

Thanks for the fix for when we get to updating to be compatible with a newer version of streamlit!

For now, the environment.yml for use with conda will pin the streamlit version to an older version so things will stop breaking when this and other packages are updated.