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mmcguffi / pLannotate

Webserver and command line tool for annotating engineered plasmids
GNU General Public License v3.0
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Retaining ORFs? #28

Open abs-yy opened 1 year ago

abs-yy commented 1 year ago

HI! I've noticed that when you have an ORF that can't be annotated with any of the databases currently in set, pLannotate does not produce an CDS feature. Adding a custom database via the -y option did produce what I wanted, but would it be possible to add predicting ORFs, for say longer than 100bps?

mmcguffi commented 1 year ago

Hi @abs-yy -- this is functionality that I have some initial code for, but have not implemented yet. I have several ideas on how to properly filter the ORF predictions so it doesn't overwhelm the plots/annotations but are probably kind of tricky to implement in practice.

All this to say, I have intentions on adding this, but wont be immediately implemented

abs-yy commented 1 year ago

Hi @mmcguffi, thanks for to info! I'll be looking forward to it!