DIAMOND does not find all potential hits

mmcguffi / pLannotate

Webserver and command line tool for annotating engineered plasmids

GNU General Public License v3.0

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Closed mmcguffi closed 2 years ago

mmcguffi commented 2 years ago

Currently, DIAMOND only reports the top 25 hits which was an oversight in initial development and can lead to missing annotations.

This will be addressed by:

reporting all hits
upgrading the DIAMOND version to 2.0.x (algorithmic improvements that find more hits)
using the full Swiss-Prot database (currently the database is trimmed)

mmcguffi commented 2 years ago

fixed in v1.1.0