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mmindje / Data-management-FRC-RBIS

The projects under this repository are only for biodiversity data management.
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We need a master list for fish species #39

Closed helendallas closed 3 years ago

helendallas commented 3 years ago

I have found some useful references and tables that you can use as a starting point for collating the fish master list;

From Fishbase: List of Freshwater Fishes reported from Rwanda https://www.fishbase.se/Country/CountryChecklist.php?c_code=646&vhabitat=fresh&csub_code=&cpresence=present

Plus these two refs.

DeVos et al 2001 Fish Checklist.pdf

Snoeks-etal-2012-SpringerBook Lake Kivu.pdf

It would also be worth checking on GBIF what fish species have been recorded. I ma not sure if you have any local fish experts in country?

Thacien1 commented 3 years ago

Dear @helendallas ,

Kindly have a look at the Fish MaterList file.

Warm regards,

RBIS Fish Master List 23 March 2021.xlsx

helendallas commented 3 years ago

@Thacien1 Sorry for the delay. I have gone through the master file and highlighted one or two issues. Mostly it was fine, well done!

The revised file is attached: RBIS.Fish.Master.List.20.April.2021.xlsx

I then did a test on the RBIS testing site to upload the master list and received some errors ( only 66 of the 76 species uploaded successfully), which I have emailed Dimas about as I am not sure why these were not uploaded. I used the FBIS fish logo.

image

I then harvested from GBIF, but it takes some time for the data to be visualised on RBIS.

Once I hear from Dimas - I will add to ticket.

mmindje commented 3 years ago

Thank you Helen.

The major problem was in the occurrence data file as thacien described. The RBIS had 352 records, instead of 1636 records. What do you suggest as well?

On Tue, 20 Apr 2021 at 10:09, Helen Dallas @.***> wrote:

@Thacien1 https://github.com/Thacien1 Sorry for the delay. I have gone through the master file and highlighted one or two issues. Mostly it was fine, well done!

The revised file is attached: RBIS.Fish.Master.List.20.April.2021.xlsx https://github.com/mmindje/Data-management-FRC-RBIS/files/6341599/RBIS.Fish.Master.List.20.April.2021.xlsx

I then did a test on the RBIS testing site to upload the master list and received some errors ( only 66 of the 76 species uploaded successfully), which I have emailed Dimas about as I am not sure why these were not uploaded. I used the FBIS fish logo.

[image: image] https://user-images.githubusercontent.com/45286876/115358200-b4414780-a1bd-11eb-931a-8ae613942094.png

I then harvested from GBIF, but it takes some time for the data to be visualised on RBIS.

Once I hear from Dimas - I will add to ticket.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/mmindje/Data-management-FRC-RBIS/issues/39#issuecomment-823072966, or unsubscribe https://github.com/notifications/unsubscribe-auth/APPTV6XKI5JNHKRT65U3OTLTJUZEZANCNFSM4XCMFP4A .

--

Mapendo MINDJE University of Rwanda-Huye Campus

mmindje commented 3 years ago

ooh sorry !!!! I was talking about the Amphibians. For the fish Yes, let us wait for Dimas for the master list.

On Tue, 20 Apr 2021 at 10:36, Mapendo MINDJE @.***> wrote:

Thank you Helen.

The major problem was in the occurrence data file as thacien described. The RBIS had 352 records, instead of 1636 records. What do you suggest as well?

On Tue, 20 Apr 2021 at 10:09, Helen Dallas @.***> wrote:

@Thacien1 https://github.com/Thacien1 Sorry for the delay. I have gone through the master file and highlighted one or two issues. Mostly it was fine, well done!

The revised file is attached: RBIS.Fish.Master.List.20.April.2021.xlsx https://github.com/mmindje/Data-management-FRC-RBIS/files/6341599/RBIS.Fish.Master.List.20.April.2021.xlsx

I then did a test on the RBIS testing site to upload the master list and received some errors ( only 66 of the 76 species uploaded successfully), which I have emailed Dimas about as I am not sure why these were not uploaded. I used the FBIS fish logo.

[image: image] https://user-images.githubusercontent.com/45286876/115358200-b4414780-a1bd-11eb-931a-8ae613942094.png

I then harvested from GBIF, but it takes some time for the data to be visualised on RBIS.

Once I hear from Dimas - I will add to ticket.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/mmindje/Data-management-FRC-RBIS/issues/39#issuecomment-823072966, or unsubscribe https://github.com/notifications/unsubscribe-auth/APPTV6XKI5JNHKRT65U3OTLTJUZEZANCNFSM4XCMFP4A .

--

Mapendo MINDJE University of Rwanda-Huye Campus

  • Assistant lecturer (MSc Conservation biology and MSc BioGeosciences)*
  • Team leader for Biodiversity data management*
  • Researcher affiliate to the - CoEB*

--

Mapendo MINDJE University of Rwanda-Huye Campus

mmindje commented 3 years ago

Dear Helen,

Do you think the Fish module can also be created to the RBIS live?

You can advise us per se

Thank you

On Tue, 20 Apr 2021 at 10:37, Mapendo MINDJE @.***> wrote:

ooh sorry !!!! I was talking about the Amphibians. For the fish Yes, let us wait for Dimas for the master list.

On Tue, 20 Apr 2021 at 10:36, Mapendo MINDJE @.***> wrote:

Thank you Helen.

The major problem was in the occurrence data file as thacien described. The RBIS had 352 records, instead of 1636 records. What do you suggest as well?

On Tue, 20 Apr 2021 at 10:09, Helen Dallas @.***> wrote:

@Thacien1 https://github.com/Thacien1 Sorry for the delay. I have gone through the master file and highlighted one or two issues. Mostly it was fine, well done!

The revised file is attached: RBIS.Fish.Master.List.20.April.2021.xlsx https://github.com/mmindje/Data-management-FRC-RBIS/files/6341599/RBIS.Fish.Master.List.20.April.2021.xlsx

I then did a test on the RBIS testing site to upload the master list and received some errors ( only 66 of the 76 species uploaded successfully), which I have emailed Dimas about as I am not sure why these were not uploaded. I used the FBIS fish logo.

[image: image] https://user-images.githubusercontent.com/45286876/115358200-b4414780-a1bd-11eb-931a-8ae613942094.png

I then harvested from GBIF, but it takes some time for the data to be visualised on RBIS.

Once I hear from Dimas - I will add to ticket.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/mmindje/Data-management-FRC-RBIS/issues/39#issuecomment-823072966, or unsubscribe https://github.com/notifications/unsubscribe-auth/APPTV6XKI5JNHKRT65U3OTLTJUZEZANCNFSM4XCMFP4A .

--

Mapendo MINDJE University of Rwanda-Huye Campus

  • Assistant lecturer (MSc Conservation biology and MSc BioGeosciences)*
  • Team leader for Biodiversity data management*
  • Researcher affiliate to the - CoEB*

--

Mapendo MINDJE University of Rwanda-Huye Campus

  • Assistant lecturer (MSc Conservation biology and MSc BioGeosciences)*
  • Team leader for Biodiversity data management*
  • Researcher affiliate to the - CoEB*

--

Mapendo MINDJE University of Rwanda-Huye Campus

helendallas commented 3 years ago

@mmindje As mentioned earlier, I am awaiting feedback from Dimas as to why some of the fish species did not upload. So until I hear from him, please do not upload to live, thanks

mmindje commented 3 years ago

Oooh yeah, I remember you said that. Thank you

I got so much on my head until I forgot some issues. Thank you Helen. Hoping to hear from Dimas as well.

On Thu, 22 Apr 2021 at 09:00, Helen Dallas @.***> wrote:

@mmindje https://github.com/mmindje As mentioned earlier, I am awaiting feedback from Dimas as to why some of the fish species did not upload. So until I hear from him, please do not upload to live, thanks

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/mmindje/Data-management-FRC-RBIS/issues/39#issuecomment-824592616, or unsubscribe https://github.com/notifications/unsubscribe-auth/APPTV6TOSXKEFMG3NT645ZTTJ7CQRANCNFSM4XCMFP4A .

--

Mapendo MINDJE University of Rwanda-Huye Campus

helendallas commented 3 years ago

@mmindje Dimas has found the issue and fixed it on production. I just uploaded the fish master list, and am now harvesting fish species from GBIF.

mmindje commented 3 years ago

Awesome, thanks for the update Helen

On Thu, 6 May 2021, 10:27 Helen Dallas, @.***> wrote:

@mmindje https://github.com/mmindje Dimas has found the issue and fixed it on production. I just uploaded the fish master list, and am now harvesting fish species from GBIF.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/mmindje/Data-management-FRC-RBIS/issues/39#issuecomment-833336331, or unsubscribe https://github.com/notifications/unsubscribe-auth/APPTV6RPEZG3GBXC7CFKF2LTMJHHFANCNFSM4XCMFP4A .