Closed cfljam closed 4 months ago
Some minor issues preventing use of read_vcf.
There is another issue in plot_map I cant fathom..encountered with my own data as well as the vignette data
> ## testing plot_map > download.file("https://github.com/mmollina/mappoly2_vignettes/raw/main/I195_x_F1-85-209_map.rda", + destfile = "temp_file.rda") trying URL 'https://github.com/mmollina/mappoly2_vignettes/raw/main/I195_x_F1-85-209_map.rda' Content type 'application/octet-stream' length 11822960 bytes (11.3 MB) ================================================== downloaded 11.3 MB > load("temp_file.rda") > ## testing plot_map > library(mappoly2) Warning messages: 1: In rgl.init(initValue, onlyNULL) : RGL: unable to open X11 display 2: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'. > load("temp_file.rda") > ls() [1] "I195xF1_85_209_map" > # just build first lg > I195xF1_85_209_map <- mapping(I195xF1_85_209_map, + lg = 1, + type = "genome", + error = 0.05, ncpus = 4) Multi-locus map estimation Processing linkage group Conf. 1 :.............................. .............................. ................ Done with map estimation > plot_map(I195xF1_85_209_map,type = 'genome') Error: assert_that: missing values present in assertion
apologies @mmollina I didnt notice your branch.
I can plot my maps OK using update_reading. Looking forward to breaking more things with my 6x mapping!
Some minor issues preventing use of read_vcf.
There is another issue in plot_map I cant fathom..encountered with my own data as well as the vignette data