mmollina / mappoly2

Genetic Linkage Maps in Autopolyploids v 2.0
MIT License
6 stars 3 forks source link

QUESTION:Recommended idioms for pipelines? #6

Open cfljam opened 2 months ago

cfljam commented 2 months ago

Hi @mmollina Since I prefer to organise complex workflows like mapping in targets pipelines, I am interested to discuss what would be the best ways to work with mappoly2 objects and workflows. It was very difficult to do this in mappoly due to references to external objects.

#> Multi-locus map estimation

s <- mapping(s, type = "mds", parent = "p1", ncpus = ncores)
s <- mapping(s, type = "genome", parent = "p1", ncpus = ncores)
s <- mapping(s, type = "mds", parent = "p2", ncpus = ncores)
s <- mapping(s, type = "genome", parent = "p2", ncpus = ncores)