Data finalization - Githubissues

mmore500 / hstrat-evolutionary-inference

How can we use phylogenetic analysis to characterize evolutionary dynamics in distributed digital evolution populations?

https://osf.io/vtxwd/

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Data finalization #8

Closed mmore500 closed 1 year ago

mmore500 commented 1 year ago

[x] stage=0+what=generate_template_phylogenies
[x] stage=1+what=descend_template_phylogenies
[x] stage=2+what=reconstruct_trees
~stage=3+what=consolidate_template_phylogenies~
- skipping this for now
[x] stage=4+what=compute_phylometrics
[x] stage=6+what=audit_reconstruction_quality
- currently running
[x] use find, xargs, and cat for fast-enough provlog collation
[x] stage5/stage7 collation
[x] upload finalized data and provlogs to OSF
[x] rerun notebooks