Add alifestd phylogeny features to auxlib

[codecov[bot]]

Codecov Report

Attention: 3 lines in your changes are missing coverage. Please review.

Comparison is base (b2d2cad) 97.54% compared to head (3f7e19e) 97.56%.

:exclamation: Current head 3f7e19e differs from pull request most recent head e32ec5b. Consider uploading reports for the commit e32ec5b to get more accurate results

Additional details and impacted files

```diff @@ Coverage Diff @@ ## master #125 +/- ## ========================================== + Coverage 97.54% 97.56% +0.02% ========================================== Files 596 606 +10 Lines 7945 8134 +189 ========================================== + Hits 7750 7936 +186 - Misses 195 198 +3 ``` | [Flag](https://app.codecov.io/gh/mmore500/hstrat/pull/125/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno) | Coverage Δ | | |---|---|---| | [tests](https://app.codecov.io/gh/mmore500/hstrat/pull/125/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno) | `97.56% <98.41%> (+0.02%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files](https://app.codecov.io/gh/mmore500/hstrat/pull/125?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno) | Coverage Δ | | |---|---|---| | [hstrat/\_auxiliary\_lib/\_\_init\_\_.py](https://app.codecov.io/gh/mmore500/hstrat/pull/125?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L19hdXhpbGlhcnlfbGliL19faW5pdF9fLnB5) | `100.00% <100.00%> (ø)` | | | [...rat/\_auxiliary\_lib/\_alifestd\_chronological\_sort.py](https://app.codecov.io/gh/mmore500/hstrat/pull/125?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L19hdXhpbGlhcnlfbGliL19hbGlmZXN0ZF9jaHJvbm9sb2dpY2FsX3NvcnQucHk=) | `100.00% <100.00%> (ø)` | | | [...rat/\_auxiliary\_lib/\_alifestd\_has\_increasing\_ids.py](https://app.codecov.io/gh/mmore500/hstrat/pull/125?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L19hdXhpbGlhcnlfbGliL19hbGlmZXN0ZF9oYXNfaW5jcmVhc2luZ19pZHMucHk=) | `100.00% <100.00%> (ø)` | | | [...xiliary\_lib/\_alifestd\_is\_chronologically\_sorted.py](https://app.codecov.io/gh/mmore500/hstrat/pull/125?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L19hdXhpbGlhcnlfbGliL19hbGlmZXN0ZF9pc19jaHJvbm9sb2dpY2FsbHlfc29ydGVkLnB5) | `100.00% <100.00%> (ø)` | | | [hstrat/\_auxiliary\_lib/\_alifestd\_mark\_leaves.py](https://app.codecov.io/gh/mmore500/hstrat/pull/125?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L19hdXhpbGlhcnlfbGliL19hbGlmZXN0ZF9tYXJrX2xlYXZlcy5weQ==) | `100.00% <100.00%> (ø)` | | | [...iary\_lib/\_alifestd\_mark\_num\_descendants\_asexual.py](https://app.codecov.io/gh/mmore500/hstrat/pull/125?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L19hdXhpbGlhcnlfbGliL19hbGlmZXN0ZF9tYXJrX251bV9kZXNjZW5kYW50c19hc2V4dWFsLnB5) | `100.00% <100.00%> (ø)` | | | [...auxiliary\_lib/\_alifestd\_mark\_num\_leaves\_asexual.py](https://app.codecov.io/gh/mmore500/hstrat/pull/125?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L19hdXhpbGlhcnlfbGliL19hbGlmZXN0ZF9tYXJrX251bV9sZWF2ZXNfYXNleHVhbC5weQ==) | `100.00% <100.00%> (ø)` | | | [...t/\_auxiliary\_lib/\_alifestd\_mark\_ot\_mrca\_asexual.py](https://app.codecov.io/gh/mmore500/hstrat/pull/125?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L19hdXhpbGlhcnlfbGliL19hbGlmZXN0ZF9tYXJrX290X21yY2FfYXNleHVhbC5weQ==) | `100.00% <100.00%> (ø)` | | | [hstrat/\_auxiliary\_lib/\_alifestd\_mark\_roots.py](https://app.codecov.io/gh/mmore500/hstrat/pull/125?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L19hdXhpbGlhcnlfbGliL19hbGlmZXN0ZF9tYXJrX3Jvb3RzLnB5) | `100.00% <100.00%> (ø)` | | | [hstrat/\_auxiliary\_lib/\_alifestd\_join\_roots.py](https://app.codecov.io/gh/mmore500/hstrat/pull/125?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L19hdXhpbGlhcnlfbGliL19hbGlmZXN0ZF9qb2luX3Jvb3RzLnB5) | `95.00% <95.00%> (ø)` | | | ... and [1 more](https://app.codecov.io/gh/mmore500/hstrat/pull/125?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno) | |

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