mmore500 / hstrat

hstrat enables phylogenetic inference on distributed digital evolution populations
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Implement population inference and create examples directory #64

Closed mmore500 closed 1 year ago

mmore500 commented 1 year ago

Implements idea from #61

codecov[bot] commented 1 year ago

Codecov Report

Base: 97.16% // Head: 97.15% // Decreases project coverage by -0.00% :warning:

Coverage data is based on head (8179d05) compared to base (c99ecd0). Patch coverage: 96.82% of modified lines in pull request are covered.

:exclamation: Current head 8179d05 differs from pull request most recent head 9acad7f. Consider uploading reports for the commit 9acad7f to get more accurate results

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #64 +/- ## ========================================== - Coverage 97.16% 97.15% -0.01% ========================================== Files 320 323 +3 Lines 4197 4259 +62 ========================================== + Hits 4078 4138 +60 - Misses 119 121 +2 ``` | Flag | Coverage Δ | | |---|---|---| | tests | `97.15% <96.82%> (-0.01%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#carryforward-flags-in-the-pull-request-comment) to find out more. | [Impacted Files](https://codecov.io/gh/mmore500/hstrat/pull/64?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno) | Coverage Δ | | |---|---|---| | [...ence/pairwise/\_calc\_rank\_of\_mrca\_bounds\_between.py](https://codecov.io/gh/mmore500/hstrat/pull/64/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L3BoeWxvZ2VuZXRpY19pbmZlcmVuY2UvcGFpcndpc2UvX2NhbGNfcmFua19vZl9tcmNhX2JvdW5kc19iZXR3ZWVuLnB5) | `100.00% <ø> (ø)` | | | [...pairwise/\_calc\_rank\_of\_mrca\_uncertainty\_between.py](https://codecov.io/gh/mmore500/hstrat/pull/64/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L3BoeWxvZ2VuZXRpY19pbmZlcmVuY2UvcGFpcndpc2UvX2NhbGNfcmFua19vZl9tcmNhX3VuY2VydGFpbnR5X2JldHdlZW4ucHk=) | `100.00% <ø> (ø)` | | | [...ence/population/\_calc\_rank\_of\_mrca\_bounds\_among.py](https://codecov.io/gh/mmore500/hstrat/pull/64/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L3BoeWxvZ2VuZXRpY19pbmZlcmVuY2UvcG9wdWxhdGlvbi9fY2FsY19yYW5rX29mX21yY2FfYm91bmRzX2Ftb25nLnB5) | `92.85% <92.85%> (ø)` | | | [...trat/phylogenetic\_inference/population/\_\_init\_\_.py](https://codecov.io/gh/mmore500/hstrat/pull/64/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L3BoeWxvZ2VuZXRpY19pbmZlcmVuY2UvcG9wdWxhdGlvbi9fX2luaXRfXy5weQ==) | `100.00% <100.00%> (ø)` | | | [...on/\_calc\_rank\_of\_earliest\_detectable\_mrca\_among.py](https://codecov.io/gh/mmore500/hstrat/pull/64/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L3BoeWxvZ2VuZXRpY19pbmZlcmVuY2UvcG9wdWxhdGlvbi9fY2FsY19yYW5rX29mX2VhcmxpZXN0X2RldGVjdGFibGVfbXJjYV9hbW9uZy5weQ==) | `100.00% <100.00%> (ø)` | | | [...ion/\_does\_definitively\_share\_no\_common\_ancestor.py](https://codecov.io/gh/mmore500/hstrat/pull/64/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L3BoeWxvZ2VuZXRpY19pbmZlcmVuY2UvcG9wdWxhdGlvbi9fZG9lc19kZWZpbml0aXZlbHlfc2hhcmVfbm9fY29tbW9uX2FuY2VzdG9yLnB5) | `100.00% <100.00%> (ø)` | | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno)

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