mmore500 / hstrat

hstrat enables phylogenetic inference on distributed digital evolution populations
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Implement tree reconstruction support #80

Closed rodsan0 closed 1 year ago

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 76.91% and project coverage change: -15.85 :warning:

Comparison is base (65f90e9) 96.96% compared to head (3788fef) 81.12%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #80 +/- ## =========================================== - Coverage 96.96% 81.12% -15.85% =========================================== Files 410 551 +141 Lines 5604 7512 +1908 =========================================== + Hits 5434 6094 +660 - Misses 170 1418 +1248 ``` | Flag | Coverage Δ | | |---|---|---| | tests | `81.12% <76.91%> (-15.85%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#carryforward-flags-in-the-pull-request-comment) to find out more. | [Impacted Files](https://codecov.io/gh/mmore500/hstrat/pull/80?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno) | Coverage Δ | | |---|---|---| | [...t/\_auxiliary\_lib/\_alifestd\_make\_ancestor\_id\_col.py](https://codecov.io/gh/mmore500/hstrat/pull/80?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L19hdXhpbGlhcnlfbGliL19hbGlmZXN0ZF9tYWtlX2FuY2VzdG9yX2lkX2NvbC5weQ==) | `100.00% <ø> (ø)` | | | [hstrat/\_auxiliary\_lib/\_alifestd\_validate.py](https://codecov.io/gh/mmore500/hstrat/pull/80?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L19hdXhpbGlhcnlfbGliL19hbGlmZXN0ZF92YWxpZGF0ZS5weQ==) | `100.00% <ø> (ø)` | | | [hstrat/\_auxiliary\_lib/\_iter\_chunks.py](https://codecov.io/gh/mmore500/hstrat/pull/80?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L19hdXhpbGlhcnlfbGliL19pdGVyX2NodW5rcy5weQ==) | `100.00% <ø> (ø)` | | | [hstrat/\_auxiliary\_lib/\_jit.py](https://codecov.io/gh/mmore500/hstrat/pull/80?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L19hdXhpbGlhcnlfbGliL19qaXQucHk=) | `100.00% <ø> (+30.76%)` | :arrow_up: | | [hstrat/\_auxiliary\_lib/\_jit\_numba\_dict\_t.py](https://codecov.io/gh/mmore500/hstrat/pull/80?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L19hdXhpbGlhcnlfbGliL19qaXRfbnVtYmFfZGljdF90LnB5) | `81.81% <ø> (+6.81%)` | :arrow_up: | | [hstrat/\_auxiliary\_lib/\_jit\_numpy\_bool\_t.py](https://codecov.io/gh/mmore500/hstrat/pull/80?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L19hdXhpbGlhcnlfbGliL19qaXRfbnVtcHlfYm9vbF90LnB5) | `75.00% <ø> (+8.33%)` | :arrow_up: | | [hstrat/\_auxiliary\_lib/\_jit\_numpy\_int64\_t.py](https://codecov.io/gh/mmore500/hstrat/pull/80?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L19hdXhpbGlhcnlfbGliL19qaXRfbnVtcHlfaW50NjRfdC5weQ==) | `75.00% <ø> (+8.33%)` | :arrow_up: | | [hstrat/serialization/\_pop\_to\_dataframe.py](https://codecov.io/gh/mmore500/hstrat/pull/80?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L3NlcmlhbGl6YXRpb24vX3BvcF90b19kYXRhZnJhbWUucHk=) | `85.71% <ø> (-14.29%)` | :arrow_down: | | [hstrat/serialization/\_pop\_to\_records.py](https://codecov.io/gh/mmore500/hstrat/pull/80?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L3NlcmlhbGl6YXRpb24vX3BvcF90b19yZWNvcmRzLnB5) | `45.45% <0.00%> (-54.55%)` | :arrow_down: | | [...tail/\_UnsatisfiableParameterizationRequestError.py](https://codecov.io/gh/mmore500/hstrat/pull/80?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno#diff-aHN0cmF0L3N0cmF0dW1fcmV0ZW50aW9uX3N0cmF0ZWd5L3N0cmF0dW1fcmV0ZW50aW9uX2FsZ29yaXRobXMvX2RldGFpbC9fVW5zYXRpc2ZpYWJsZVBhcmFtZXRlcml6YXRpb25SZXF1ZXN0RXJyb3IucHk=) | `100.00% <ø> (ø)` | | | ... and [200 more](https://codecov.io/gh/mmore500/hstrat/pull/80?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno) | | ... and [84 files with indirect coverage changes](https://codecov.io/gh/mmore500/hstrat/pull/80/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Matthew+Andres+Moreno) Help us with your feedback. 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mmore500 commented 1 year ago

TODO